Thursday, January 30, 2020

Role of ATP in Supporting Energy to the Body Essay Example for Free

Role of ATP in Supporting Energy to the Body Essay When food is ingested, it is broken down into components and utilized in a specific manner in three major cellular pathways to provide energy for the cells and the body.   Ultimately, these pathways involve the breakdown and utilization of food, the utilization of O2 and the production of CO2, the generation and regeneration of ATP and the production of water.   Therefore, these processes involve respiration as well as the breakdown and utilization of food and oxygen. Three major pathways are involved:   glycolysis which takes place in the cellular cytoplasm and breaks down glycogen and glucose from food, the Krebs Cycle which occurs in the mitochondrion and oxidative phosphorylation which occurs in the mitochondrion.   Ã‚  Ã‚   These three pathways occur in two cellular locations.   Glycolysis takes place in the cytoplasm and The Krebs Cycle and oxidative phosphorylation take place in the mitochondria.   During these three pathways, there is a utilization and production of ATP that biochemists follow closely.   It results in the net production of 36 molecules of ATP.   Ã‚  Ã‚  Ã‚   To understand the entire process that illustrates how food is broken down and utilized in the body, it is instructive to follow a bolus, that is, food consumed, chewed and swallowed.   Each step involves some aspect of digestion that breaks down complex sugar and protein molecules into smaller units.   Proteins are broken down into peptides and amino acids while starches and other complex sugars are broken down into glucose. The glucose undergoes glycolysis in the cellular cytoplasm beginning with the enzyme hexokinase, and the entire process of glycolysis is controlled by the rate limiting enzyme phosphofructokinase (PFK).   Kinase enzymes (enzymes that break down ATP) are common all along the three pathways involved, glycolysis, the Krebs Cycle (also called the Citric Acid Cycle and the Tricaroxylic Acid Cycle) and phosphorylative oxidation.   Kinases are enzymes that break down or utilized ATP, ADP and AMP as their substrate or one of their substrates.   Ã‚  Ã‚  Ã‚   Fiske and Subbarow discovered and characterized ATP in 1929.   At that time, the work of some demonstrated that the breakdown of ATP provided energy for muscle contraction, but other studies demonstrated that there was ATP synthesis during glycolysis and during electron transport.   Although ATP is made throughout the cell, the cellular location of ATP synthesis varies with the biochemical pathways associated with ATP synthesis.    Although one common pathway of ATP synthesis and breakdown is associated with the adenylate kinase reaction that forms two ADP molecules from ATP and AMP, studies in the late 1920s and beyond demonstrated that ATP synthesis was also associated with glycolysis and during electron transport.   In 1949, Kennedy and Lehninger demonstrated that ATP synthesis and the citric acid cycle occur in the mitochondria.   We now recognize that ATP synthesis and breakdown can be associated with specific biochemical pathways in the cell cytoplasm and in the mitochondria.    Some enzymes are sensitive to the ratio of ATP to AMP and to the presence of ADP.   This realization led to the concept of the energy charge, the relative concentration of ATP to ADP to AMP in the cell.   An energy charge of 1.0 represents all ATP, and energy charge of 0 represents all AMP and an energy charge of 0.5 represents all ADP or equal amounts of ATP and AMP or some combination of the two.   These ratios, and thus the energy charge are important to the cell because many cellular enzymes such as PFK are sensitive to and regulated by the relative amounts of the adenine nucleotides, ATP, ADP and AMP. Glycolysis   Ã‚  Ã‚  Ã‚   Glycolysis, also referred to as the Embden-Meryhof-Parnas pathway (figure 1), is essentially the breakdown of glucose in the cytoplasm of the cell.   The glycolytic process can begin with glucose or glycogen.   During the process, glycolysis generates the high energy compounds ATP and NADH that serve as the energy sources in the cell.   Among the many cellular roles for glycolysis, it serves three central cellular functions.   First, it generates high energy molecules such as ATP and NADH. It also produces pyruvate for the Krebs cycle and a variety of three and six carbon compounds involved in the intermediary metabolism of the cell.   The rate limiting enzyme for glycolysis, that is, the key enzyme that controls the glycolytic pathway, is phosphofructokinase (PFK).   PFK is feedback inhibited by high levels of ATP which acts by lowering the affinity of the substrate F6P for PFK.   AMP can reverse the inhibitory effect of ATP rendering PFK, and thus the control of glycolysis very sensitive to the ratio of ATP/AMP in the cytoplasm.   Ã‚  Ã‚  Ã‚   The final product arising from glycolysis depends on the cellular conditions.   Whereas glycolysis begins with glucose or glycogen, it ends with the production two molecules of the three carbon compound pyruvate.   Under anaerobic conditions, pyruvate is reduced to form lactic acid or ethanol and under aerobic conditions pyruvate loses CO2 and forms the product acetyl-coenzyme A as a result of oxidation of pyruvate to carbon dioxide and water in the citric acid cycle within the mitochrondia.   Glycolysis occurs in the cellular cytoplasm and the Krebs Cycle and oxidative phosphorylation occur in the mitochondria.   Ã‚  Ã‚  Ã‚   Glycolysis results in the formation of fructose from glucose and the formation of glyceraldehyde 3-phosphate, 3-phosphoglycerate and compounds along the pathway on the way to splitting the resulting 6-carbon compound into two three carbon units of pyruvate.   In the process, NAD+ serves as a hydrogen carrier and is reduced to NADH, the oxidized form of NAD+. In the cell, the oxidation of aldehyde to carboxylic acid is very complex and strongly exergonic and is generally coupled to ATP synthesis.   Glucose goes to Glu-6-P to Fructose with the breakdown of two ATP molecules.   Fructose gives rise to glyceraldehyde-3-phosphate which is ultimately splite in a complex reaction chain to phosphoglycerate, phosphoenolpyruvate which is finally split into two molecules of pyruvate by pyruvate and the regeneration of the two ATP molecules previously utilized. Glycolysis Figure 1. Embden-Meryhof-Parnas pathway, also known as glycolysis.   Reproduced from Michael W. King, Wednesday, 22-Mar-2006. The Citric Acid Cycle   Ã‚  Ã‚  Ã‚   The Citric Acid Cycle (Figure 2) is the most complex of the three components associated with carbohydrate metabolism and the consumption of food.   It involves the following eight enzymes and the components they use as substrate:   Citrate Synthase, Aconitase, Isocitrate Dehydrogense, alpha-ketoglutarate Dehydrogenase, Succinyl-CoA Synthetase, Succinate Dehydrogenase, Fumarase, Malate Dehydrogenase.   The generation of acetyl-CoA from carbohydrates is a major control point of the Krebs cycle.   Therefore, glycolysis and the rate limiting enzyme of glycolysis, PFK, play a role in the control of the Krebs cycle.   The oxidation of an acetyl group is a difficult chemical process and may be the reason that nature developed the Tricarboxylic Acid Cycle (TCAC), also known as the Citric Acid Cycle and the Krebs Cycle. The Krebs cycle begins when the products of glycolysis leave the cytoplasm (cytosol) and enter the mitochondria.   Once glycogen or glucose have been broken down into two three carbon units of pyruvate, the pyruvate can be further broken down into a high energy compound called acetyl-CoA resulting in the production of CO2 and water.   Acetyl-CoA combines with oxaloacetate (also spelled oxalacetate) to form the 6 carbon compound citrate.   From this condensation reaction, a complex array of biochemical reactions take place that involve various molecular transformations such as isomerizations and molecular rearrangements. These various steps result in transformations from the 6-carbon condensation that gave rise to citrate and subsequent 6-carbon units of cis-aconitate, isocitrate to a five carbon unit of alpha-ketoglutarate to the four carbon units of succinate, fumarate, malate and oxaloacetate which, once regenerated is available to combine with another high energy acetyl-CoA and form another unit of citrate under the influence of the enzyme citrate synthetase.   After citrate is formed, two carbon atoms are removed as CO2 as the various TCAC intermediates are formed leading to the regeneration of the 4-carbon oxaloacetate. There are several oxidation steps on the way to the reformation of oxaloacetate.   Each step feeds reducing agents, either NADH or FADH, into the cycle on the way to regenerating oxaloacetate from citrate.   The reducing agents (or reducing equivalents) remove hydrogen from the enzyme substrates.   So, the reducing agents serve as a pool of hydrogen carriers and allow for the further synthesis of ATP during electron transport.   The TCAC results in the production of 2 ATP molecules, 10 carrier molecules and CO2 from each molecule of glucose. Glycolysis and the Krebs Cycle Figure 2. Glycolysis and the Krebs Tricarboxylic Acid Cycle (TCAC).   Reproduced  Ã‚  Ã‚  Ã‚  Ã‚  Ã‚  Ã‚  Ã‚  Ã‚  Ã‚  Ã‚   from David R. Caprette, 2005. Electron Transport   Ã‚  Ã‚  Ã‚   The complex molecules that were reduced during the Krebs Cycle are re-oxidized by means of the electron transport system. (Figure 3)   Although TCAC results in the production of 2 ATP molecules from each molecule of glucose, electron transport gives rise to 34 ATP molecules and water from the carrier molecules.   Therefore, the majority of the ATP in the cell must be produced in the mitochondria.   The re-oxidation of reduced NADH and FADH2 by O2 involves a sequence of electron carriers in what has become known as the electron transport chain.   It ultimately results in the generation of three molecules of ATP from ADP and inorganic phosphate for every oxygen molecule involved. This process is called oxidative phosphorylation and is the principal source of usable energy (in the form of ATP) in the cell.   It is provided by the breakdown of both carbohydrates and fats.   In the process, reduced NADH transfers a hydrogen atom plus two electrons (a hydride ion and H-).   Two complex molecules, NAD+ and FAD+, serve as the pool of hydrogen carriers and thus act reducing agents in the mitochondria; NAD+ is reduced to NADH and FAD is reduced to FADH2.   These compounds serve as electron carriers because their oxidation or reduction, the transfer of H+ (a proton), is accompanied by one or two of the electrons. The electrons donated from NADH or FADH2, upon entering this complex, travel from one carrier to the next, with each carrier being a somewhat more powerful oxidant than the previous one.   The hydrogen donated by the reducing agents combines with O2 such that with each molecule of O2 combines with 4 H+ to form water.   Therefore, two molecules of NADH must pass four electrons down the electron transport chain for each reduced oxygen molecule (O2). The chemical structures of the components of the electron transport chain fall into several distinct classes.   Most are proteins that contain special coenzymes called prosthetic groups.   Although they differ in chemical structure, a major difference between NADH and FADH2 is that NADH difuses freely between the dehydrogenases transfer hydrogen to it whereas FAD+ and FADH2 do not.   Another class of electron carriers in the mitochondrial membranes is iron-sulfur [Fe-S] clusters that are bound to proteins and release Fe3+ or Fe2+ plus H2S when acidified.   All of the carriers only appear to carry one electron at a time.   Ã‚  Ã‚  Ã‚   Ubiquinone or Coenzyme Q is a third hydrogen carrier localized in the mitochondrial membranes.   It is a common electron carrier that collects electrons from three or more points of input along the electron transport chain and passes them to molecular oxygen.   Unlike the other mitochondrial electron carriers, ubiquinone is not uniquely associated with proteins.   The cytochromes are a final class of electron carrier localized in the mitochondrial membrane.   Cytochromes are small, chemically distinct proteins that contain heme.   Like the other electron transport agents, the cytochromes only carry a single electron.   Cytochromes pass electrons from cyt bcyt ccyt acyt a3O2 Electron Transport/Oxidative Phosphorylation Figure 3.   Electron Transport during Oxidative Phosphorylation.   Reproduced from M. W. King, 2001. Summary   Ã‚  Ã‚  Ã‚   The pathways discussed here involve food consumption and energy utilization arising from food consumption.   Once food is taken in and reaches the stomach, it enters the body and the cells of the body.   Before digestion, food consists of complex, long chain molecules that must be broken during digestion beginning in the mouth and continuing in the stomach.   Once digested food reaches the cells, long chain molecules such as starch and other complex carbohydrates are further broken down into glucose.   Glucose, a six carbon compound, undergoes the process of glycolysis in the cellular cytoplasm to become two three carbon units of pyruvate. Under anaerobic conditions, pyruvate goes to lactic acid or ethanol, but in the presence of oxygen, pyruvate breaks down into a two-carbon compound, Acetyl-CoA and enters the Krebs Cycle.   There, food can be used to form energy for the cell in the form of ATP.   In the mitochondria, 36 molecules of ATP are formed for each molecule of O2.   Two ATP molecules arise from the Krebs cycle and 34 molecules arise from electron transport for each molecule of oxygen.   Thus, food consumed and oxygen taken in combine to replenish the energy supplies in the body in the form of ATP. References Caprette, David R.   Substrate Oxidation:   Krebs Reactions.   Experimental Biosciences 31 May, 2005.   The Krebs Cycle:   http://www.ruf.rice.edu/~bioslabs/studies/mitochondria/mitokrebs.html, Thursday, 7 June 2007. King, Michael W. Digestion of Dietary Carbohydrates.   Wednesday, 22-Mar-2006 Glycolysis: http://web.indstate.edu/thcme/mwking/glycolysis.html, Thursday, 7 June 2007 King, Michael W. Principals of Reduction/Oxidation (Redox) Reactions. Friday, 30 Mar-2007.   Oxidative Phosphorylation:   http://web.indstate.edu/thcme/mwking/oxidative-phosphorylation.html, Thursday, 7 June 2007.

Wednesday, January 22, 2020

Freedom of Expression on the Internet: Comparison between Canada and the United States :: Free Speech in Cyberspace

I. Introduction â€Å"Congress shall make no law †¦ abridging the freedom of speech, or of the press †¦Ã¢â‚¬  as stated by the First Amendment of the United States Constitution[1]. Most subsequent democracies have adopted this view as well, believing that it is a fundamental part of what makes a democratic system effective. For example, Canada has given their citizens the right to freedom of speech; but like the United States, they have placed certain limitations which restrict its usage. The limitations were put in place because the right to free speech had been abused, especially when considering its use in cyberspace. Freedom of speech in cyberspace is inherently a global issue because the Internet is so pervasive, so Canada and the United States are being extremely cautious by using preventative techniques. After looking at the ethical issues involved, I believe that speech in cyberspace should not be completely â€Å"free† and should be regulated by increasing the security me asures placed on Internet websites. II. Background In order to thoroughly grasp the significance of free speech in cyberspace, it is important to review the basics of free speech in general. Free speech is â€Å"the right to express any opinion in public without censorship or restraint by the government,† but also the right to listen/read/watch another person’s right to free speech.[2] Although this definition states that the government cannot use censorship, the government has afforded itself some loopholes. The Fourteenth Amendment extends the right of free speech to state and local governments as well as government-run institutions (public schools, colleges, and universities). Private schools are not restricted, yet most choose to adopt the policies of free speech anyways or are mandated to do so by the state governments.[3] The key words to notice here are â€Å"public† and â€Å"private†, as they can easily demonstrate the right to free speech. If the free speech takes place in a public forum, such as in books or at the park, then it cannot be censored. However, if it takes place in a private forum, such as within a private building or organization, then the free speech can be censored. The Canadian government provided a constitutional guarantee of freedom of expression in 1981 under the Charter of Rights and Freedoms. However, the Canadian courts have used Section 1 of the Charter (provides that all rights are subject to such reasonable limits as can be justified in a free and democratic society) to â€Å"justify various forms of censorship.

Monday, January 13, 2020

Limitations of Machines Essay

What is 9,999,999 times 9,999,999? You would not be able to enter that in your calculator, because your calculator has limitations on what it can accomplish, as do all machines. A machine must have boundaries. If these boundaries were ever breached machine could become alive. From the wise mouth of Elbert Hubbard, â€Å"One machine can do the work of fifty men. No machine can do the work of one extraordinary man.† A machine will never exceed the potential of an outstanding individual. No matter how complex or advanced the technology it will never best a genuine- unique man. The use of machines has and should always be tools. Once the machine becomes more useful than the creator it stops being a tool and thus breaks it s natural limits. This has never happened before because machines lack a specific trait that every living thing has. That trait, the undeniable ability is called a free will. Without free will even us humans would never be able to surpass are limits. The choices you can make are what separates you from a living being and machine. It is because they stay chained to one path is the reason why a machine’s abilities will never exceed a human’s potential. Think about why machines were first built. It’s not because they were needed, rather it is because they were convenient. Technology was created to quickly do the average man’s work. You cannot build a machine that does your normal job without first knowing how accomplish it without the use of a machine. This proves machines were built out of curiosity, rather than out of necessity. The earliest machines were built to function to a certain limit. Without that restraint machines would cease to be exactly what they are. A machine is a tool that can execute at an almost perfect accuracy. Machines only accomplish this feet, because they operate within their own area or limitations. A machine without limitations will not function affectively and accurately. It will cease to be, and its identity of a machine will dissipate. Scientists have pondered making a machine without boundaries or restrictions. They wish to build something like humans called, â€Å"Artificial intelligence.† It will have feelings and free will. It will be able to make unreasonable decisions based on instinct, but its instinct could lead it to making the wrong choices. Some fear if artificial intelligence was ever created, mankind would fall. Technology should never pass a certain extremity, because we would lose the sight of those extraordinary men. When thinking back about what Elbert Hubbard said, I strongly believe machines were built to share the abilities of those unique extraordinary men. Machines are built to answer what has already been solved by man. They are built to make life less difficult throughout day. The machine is meant to be as useful as the inventor created it to be. No more no less, because a machine without limits is it really a machine.

Sunday, January 5, 2020

Vibratory Rock Tumbler Instructions

Vibrating or vibratory rock tumblers, such as those made by Raytech and Tagit, can polish rocks in a fraction of the time required by rotary tumblers. They also result in polished stones that retain the shape of the rough material, as opposed to the rounded shapes obtained by rotary tumbling. On the other hand, vibratory tumblers tend to be a bit more expensive than their rotary counterparts. However, if time is money and you want to retain more of the shape and size of the original material, then a vibratory tumbler may be just what you need. Vibratory Rock Tumbling Materials List A vibratory tumbler.Rocks. You will get better results with a mixed load that includes both small and large rocks.Filler. Plastic pellets are great, but you can use small rocks having the same or lesser hardness as your load.Silicon carbide grit, pre-polish and polish (e.g., tin oxide, cerium oxide, diamond).Soap flakes (not detergent). Ivory soap flakes are recommended. How To Use a Vibratory Rock Tumbler Fill the bowl of the tumbler about 3/4 full with your rock.If you do not have sufficient rock to fill the bowl to the 3/4 level, then add plastic pellets or other filler.Add the required amount of SiC (silicon carbide) grit and water. See the table below to get a sense of how much is needed. If you have the instruction manual that came with the tumbler, start out with those quantities. Keep records, so if you make changes you will know the effect the changes had on the polishing.Place the lid on the tumbler and run the vibrator. Let it run for a day or so and make certain that a slurry is forming. Evaporation will occur, especially if the external temperature is hot, so you may need to add water from time to time to maintain the slurry consistency.When the rock has achieved the desired smoothness and roundness, remove the load and rinse the bowl and the rocks thoroughly with water.Return the rock to the bowl, add a tablespoon of soap flakes, and fill the bowl with water to the top of the rocks. Vibrate the mixture for about half an hour. Rinse the rocks and the bowl. Repeat this step two more times.Return the rocks to the bowl and proceed to the next polishing step with the next grit (see the Table).After the final polish step, perform the washing/rinsing process and allow the stones to dry. Here are some conditions, intended for a 2.5 lb tumbler. You can adjust the quantities for your specific needs. The duration for each step is approximate - check your load and keep records to find the conditions that work best for you. Experiment with different polishing compounds to find the type that works best for your stones. Grit Type SiC SiC SiC SiC SnO2 CeO2 Diamond Diamond Mesh 220 400 600 1,000 --- --- 14,000 50,000 Grit Amount 8 tbls 4 tbls 4 tbls 3 tbls 4 tbls 4 tbls 1 cc 1 cc Water Cups 3/4 3/4 3/4 1/2 1/2 1/2 1/2 1/2 Soap Tbls 0 0 0 0 1/3 1/3 1 1 Speed fast fast fast fast slow slow slow slow Stones Hardness Days Days Days Days Days Days Days Days Sapphire 9 28 7 7 7 5 --- --- --- EmeraldAquamarineMorganite 8 3 2-3 2-4 2 2-4 --- --- --- TopazZircon 7.5 3-8 2-3 2 2 2 --- --- --- AgateAmethystCitrineRock CrystalChrysoprase 7 0-7 3-4 2-3 2-3 0-3 3-------- --- --- Peridot 6.5 --- 2 2 2 --- --- 2 2 Opal 6 --- --- 1 2 2 --- --- --- Lapis Lazuli 5.5 --- 4 3 3 2 --- --- --- Apache TearsApatite 5 --- 2-3 1-2 1 1-- --- ---1 --1 *Use a slow speed for all steps when polishing stones with Mohs hardness of 6.5 or lower (peridot, opal, lapis, obsidian, apatite, etc.). Helpful Tips for a Perfect Polish Make a balanced load that includes for large and small rocks. For a 2.5 lb bowl, sizes from 1/8 to 1 work well.A proper slurry is needed to get the best polish in the least time. If there is too little water, then the thickness of the mixture will prevent proper movement, thus slowing the polishing action. Too much water results in too thin of a slurry, which will result in a much longer time to achieve a polish. The grit may settle out of the mixture altogether.Never wash grit down the drain! While it doesnt typically present an environmental hazard, theres a good chance it will cause a clog that cant be removed using chemicals.Plastic pellets may be rinsed and reused, but you cannot reuse grit. Are you looking for information on using your tumbler to polish jewelry or metal components? Heres what you need to do.